diseases.chlamydia

diseases.chlamydia

Chlamydia trachomatis disease module

Classes

Name	Description
CTPars	Parameters for the chlamydia disease module.
Chlamydia	Chlamydia trachomatis disease module.
ChlamydiaBL	Chlamydia model with bacterial load dynamics.

CTPars

diseases.chlamydia.CTPars(**kwargs)

Parameters for the chlamydia disease module.

Extends STIPars with chlamydia-specific symptom probabilities, care-seeking rates, clearance durations, and PID progression values.

Chlamydia

diseases.chlamydia.Chlamydia(
    pars=None,
    name='ct',
    init_prev_data=None,
    **kwargs,
)

Chlamydia trachomatis disease module.

Models chlamydia as an SEIS infection with sex-stratified symptom probabilities, care-seeking behavior, PID complications (females), and natural clearance.

Parameters

Name	Type	Description	Default
pars	dict	Override default parameters from CTPars.	None
name	str	Module name used for results and parameter routing. Default: 'ct'.	'ct'
init_prev_data		Optional initial prevalence data by age/sex.	None
**kwargs		Additional parameters passed to update_pars.	{}

ChlamydiaBL

diseases.chlamydia.ChlamydiaBL(pars=None, **kwargs)

Chlamydia model with bacterial load dynamics.

Extends Chlamydia with a logistic bacterial load model that modulates transmissibility over the course of infection, including growth to peak load and exponential decay.

Parameters

Name	Type	Description	Default
pars	dict	Override default parameters from CTPars plus bacterial load parameters.	None
**kwargs		Additional parameters passed to update_pars.	{}

Methods

Name	Description
set_ct_load	Bacterial load dynamics
set_prognoses	Set initial prognoses for adults newly infected
update_pre	Updates prior to interventions

set_ct_load

diseases.chlamydia.ChlamydiaBL.set_ct_load(uids)

Bacterial load dynamics

set_prognoses

diseases.chlamydia.ChlamydiaBL.set_prognoses(uids, source_uids=None)

Set initial prognoses for adults newly infected

update_pre

diseases.chlamydia.ChlamydiaBL.update_pre()

Updates prior to interventions